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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
34
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
Assay category
79
DNA accessibility
62
Transcription
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
26
October, 2019
20
June, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
128
bam
103
bigWig
100
bed narrowPeak
58
tsv
43
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tagAlign
4
bed bed3
4
txt
Organism
175
Homo sapiens
Biosample type
107
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
154
GRCh38
123
hg19
Lab
175
AMP-T2D consortium
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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