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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
15
ChIP-seq
1
GRO-seq
Assay category
18
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
18
June, 2019
9
December, 2017
6
February, 2018
1
January, 2018
Available data
47
bam
47
bigWig
32
bed narrowPeak
20
bed bed3+
20
fastq
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
tsv
Organism
34
Homo sapiens
Biosample type
18
tissue
16
in vitro differentiated cells
Organ
509
liver
476
pancreas
338
epithelium
318
kidney
232
brain
205
heart
171
connective tissue
146
vasculature
141
blood vessel
101
bone element
98
limb
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
55
eye
27
nerve
20
vein
19
lung
18
ureter
16
embryo
16
skeleton
16
spleen
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
34
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
1
hg18
Lab
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
34 results
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Clear Filters
DNase-seq
ChIP-seq
GRO-seq
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
in vitro differentiated cells
pancreatic endoderm
13
1
Hepatic endoderm
2
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