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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
13
ChIP-seq
10
total RNA-seq
1
GRO-seq
Assay category
18
DNA accessibility
13
DNA binding
10
Transcription
Target of assay
6
histone
6
histone modification
5
narrow histone mark
4
control
3
transcription factor
1
broad histone mark
Date released
18
June, 2019
13
December, 2017
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
41
bam
37
bigWig
26
bed narrowPeak
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
14
fastq
10
tsv
Organism
42
Homo sapiens
Biosample type
18
tissue
16
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
37
GRCh38
37
hg19
1
hg18
Lab
42
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
42 results
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DNase-seq
ChIP-seq
total RNA-seq
GRO-seq
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
in vitro differentiated cells
pancreatic endoderm
9
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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