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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
19
total RNA-seq
5
ChIP-seq
4
pCHi-C
Assay category
50
DNA accessibility
19
Transcription
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
25
June, 2019
21
October, 2019
1
February, 2020
Available data
51
bed narrowPeak
25
bam
24
bigBed narrowPeak
24
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
1
bed bedMethyl
bigBed bedMethyl
Organism
78
Homo sapiens
Biosample type
74
tissue
4
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
78
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
left renal pelvis
4
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primary cell
retinal pigment epithelial cell
1
3
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