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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
19
total RNA-seq
4
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
50
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
24
June, 2019
19
October, 2019
1
February, 2020
1
July, 2019
Available data
50
bed narrowPeak
24
bam
23
bigBed narrowPeak
23
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
72
tissue
4
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
51
hg19
23
GRCh38
Lab
76
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
renal pelvis
10
left renal pelvis
4
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primary cell
retinal pigment epithelial cell
1
2
1
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