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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
DNase-seq
43
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
69
DNA accessibility
43
DNA binding
15
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
50
June, 2019
43
October, 2019
19
April, 2020
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
106
bam
89
bed narrowPeak
88
bigWig
82
bigBed narrowPeak
52
bed bed3+
52
bed broadPeak
52
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
132
Homo sapiens
Biosample type
133
tissue
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
19
LungMap
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
114
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
artery
BIOSAMPLE
ASSAY
133 results
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DNase-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
2
35
1
5
muscle of leg
13
7
1
lung
10
9
1
muscle of arm
17
renal pelvis
10
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