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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
24
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
7
pCHi-C
6
WGBS
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
429
Transcription
78
DNA binding
68
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
26
June, 2019
23
October, 2018
22
October, 2019
19
April, 2020
13
July, 2019
3
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
467
bam
449
bigWig
407
tsv
64
bed narrowPeak
44
fastq
34
bigBed narrowPeak
28
bed bed3+
25
bed broadPeak
24
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
588
Homo sapiens
Biosample type
582
tissue
7
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
571
AMP
19
LungMap
Genome assembly (visualization)
478
hg19
448
GRCh38
Lab
571
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
590 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
1
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
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primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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