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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
22
DNase-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
6
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
61
DNA accessibility
28
Transcription
6
DNA binding
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
25
June, 2019
23
October, 2019
19
April, 2020
1
February, 2020
1
July, 2019
1
March, 2020
Available data
52
bed narrowPeak
26
bam
25
bigWig
24
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
100
Homo sapiens
Biosample type
96
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
19
LungMap
Genome assembly (visualization)
53
hg19
25
GRCh38
Lab
82
AMP-T2D consortium
19
Xin Sun, UCSD
BIOSAMPLE
ASSAY
101 results
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ATAC-seq
DNase-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
14
2
4
retina
15
3
3
lung
10
9
1
pigmented layer of retina
12
2
renal pelvis
10
+ See 3 more…
primary cell
retinal pigment epithelial cell
1
3
1
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