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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
4
ChIP-seq
1
RRBS
Assay category
60
DNA accessibility
28
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
24
June, 2019
21
October, 2019
19
April, 2020
1
February, 2020
1
July, 2019
1
March, 2020
Available data
50
bed narrowPeak
24
bam
23
bigBed narrowPeak
23
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
97
Homo sapiens
Biosample type
94
tissue
4
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
351
kidney
347
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
19
LungMap
Genome assembly (visualization)
51
hg19
23
GRCh38
Lab
79
AMP-T2D consortium
19
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
98 results
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ATAC-seq
DNase-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
lung
10
9
1
pigmented layer of retina
12
2
renal pelvis
10
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primary cell
retinal pigment epithelial cell
1
2
1
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