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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
single cell RNA-seq
94
ChIP-seq
total RNA-seq
48
DNase-seq
47
ATAC-seq
10
snATAC-seq
8
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
105
DNA accessibility
103
Transcription
94
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
53
June, 2019
36
February, 2023
21
May, 2019
19
April, 2020
15
July, 2019
14
February, 2021
6
March, 2020
6
October, 2019
Available data
169
bed narrowPeak
160
bam
133
bigWig
112
bigBed narrowPeak
97
tsv
48
bed bed3+
48
bed broadPeak
48
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
318
Homo sapiens
Biosample type
296
tissue
14
cell line
9
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
300
AMP
19
LungMap
Genome assembly (visualization)
175
GRCh38
137
hg19
Lab
300
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
319 results
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single cell RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
2
4
1
1
1
coronary artery
5
2
36
heart
1
14
18
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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