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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
237
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
359
bam
328
bigWig
175
tsv
164
bed narrowPeak
146
fastq
103
bigBed narrowPeak
74
tagAlign
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
448
Homo sapiens
Biosample type
337
tissue
85
cell line
15
in vitro differentiated cells
11
primary cell
Organ
773
pancreas
650
connective tissue
483
adipose tissue
447
liver
395
epithelium
316
heart
191
kidney
172
vasculature
171
blood vessel
158
brain
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
448
AMP
Genome assembly (visualization)
331
hg19
306
GRCh38
Lab
397
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
November, 2017
BIOSAMPLE
ASSAY
448 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
bladder (urinary bladder)
1
cell line
HepG2
63
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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