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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
4
ChIP-seq
2
pCHi-C
2
total RNA-seq
1
ATAC-seq
1
RRBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
4
DNA binding
3
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
August, 2017
5
July, 2019
4
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
4
bam
4
tsv
2
bedpe bed3+
2
bigWig
2
hic
1
bed bed3+
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
txt
Organism
18
Homo sapiens
Biosample type
15
tissue
3
primary cell
Organ
275
pancreas
225
liver
218
epithelium
149
kidney
127
heart
93
bone element
69
brain
58
connective tissue
55
eye
45
vasculature
43
blood vessel
26
adipose tissue
26
limb
20
lung
17
musculature of body
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
58
hg19
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
month_released!
August, 2017
BIOSAMPLE
ASSAY
18 results
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Hi-C
ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
RRBS
single cell RNA-seq
snATAC-seq
tissue
gastrocnemius medialis
4
1
psoas muscle
2
1
skeletal muscle tissue
1
1
1
muscle of leg
2
bladder (urinary bladder)
1
+ See 1 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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