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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
DNA accessibility
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
1
October, 2019
Available data
bam
140
bigWig
75
bed narrowPeak
71
bigBed narrowPeak
68
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
6
tagAlign
3
hic
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
Organism
16
Homo sapiens
Biosample type
11
tissue
5
primary cell
Organ
159
pancreas
127
kidney
126
epithelium
107
heart
89
bone element
89
liver
71
connective tissue
46
adipose tissue
41
brain
37
musculature of body
26
eye
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
6
hg19
Lab
16
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
files.file_type!
bam
BIOSAMPLE
ASSAY
16 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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