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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
535
total RNA-seq
71
ATAC-seq
20
DNase-seq
10
single cell RNA-seq
8
WGBS
6
pCHi-C
3
small RNA-seq
2
Capture-C
2
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
548
Transcription
DNA binding
92
DNA accessibility
10
DNA methylation
3D chromatin structure
Date released
515
February, 2021
49
February, 2023
27
July, 2019
13
June, 2019
11
August, 2021
9
October, 2019
8
August, 2017
6
November, 2020
5
February, 2020
4
March, 2020
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
574
bam
568
bigWig
546
tsv
75
bed narrowPeak
26
bed bed3+
25
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
11
fastq
6
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
1
bedpe bed3+
1
tar
Organism
658
Homo sapiens
Biosample type
532
tissue
60
cell line
36
primary cell
30
in vitro differentiated cells
1
stem cell
Organ
719
pancreas
530
connective tissue
418
adipose tissue
387
epithelium
301
kidney
256
heart
235
liver
159
bone element
129
vasculature
126
blood vessel
107
artery
65
brain
56
eye
52
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
658
AMP
1
T1D
Genome assembly (visualization)
607
GRCh38
593
hg19
Lab
654
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
assay_slims!
DNA binding
3D chromatin structure
BIOSAMPLE
ASSAY
659 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Capture-C
RRBS
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
bone tissue
58
coronary artery
1
36
2
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
endothelial cell of umbilical vein
2
1
choroid plexus epithelial cell
1
1
+ See 13 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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