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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
25
ChIP-seq
6
single cell RNA-seq
Hi-C
2
WGBS
1
pCHi-C
Assay category
67
Transcription
25
DNA binding
2
DNA methylation
Target of assay
20
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
54
February, 2021
12
October, 2019
11
May, 2019
7
July, 2019
6
August, 2021
3
February, 2020
2
March, 2020
Available data
177
bam
145
bigWig
bed narrowPeak
77
bigBed narrowPeak
68
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
95
Homo sapiens
Biosample type
54
cell line
32
tissue
9
primary cell
Organ
723
pancreas
608
connective tissue
478
adipose tissue
365
epithelium
346
liver
199
heart
170
kidney
151
bone element
98
vasculature
96
blood vessel
brain
67
artery
30
musculature of body
28
eye
26
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
95
AMP-T2D consortium
assay_title!
Hi-C
files.file_type!
bed narrowPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
2
tissue
aorta
1
2
4
2
1
thoracic aorta
2
4
tibial artery
1
5
ascending aorta
2
3
coronary artery
1
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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