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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
2
July, 2019
2
March, 2020
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
67
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
80
Homo sapiens
Biosample type
62
tissue
10
cell line
8
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
80
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
files.file_type!
bigWig
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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