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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
4
total RNA-seq
1
GRO-seq
Assay category
28
DNA binding
4
Transcription
Target of assay
14
histone
14
histone modification
10
narrow histone mark
9
control
5
transcription factor
4
broad histone mark
2
RNA binding protein
Date released
13
December, 2017
13
February, 2018
6
November, 2017
1
January, 2018
Available data
221
bam
184
bigWig
147
bed narrowPeak
83
bigBed narrowPeak
81
tsv
33
fastq
17
bed broadPeak
17
bigBed broadPeak
16
bed bed3+
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
33
Homo sapiens
Biosample type
27
in vitro differentiated cells
6
primary cell
Organ
471
pancreas
465
liver
257
epithelium
100
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
33
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
1
hg18
Lab
33
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
primary cell
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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