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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
single cell RNA-seq
39
ChIP-seq
35
ATAC-seq
10
WGBS
5
total RNA-seq
4
DNase-seq
4
pCHi-C
Assay category
104
Transcription
39
DNA accessibility
39
DNA binding
10
DNA methylation
Target of assay
36
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
98
August, 2021
36
February, 2023
15
May, 2019
10
April, 2019
10
July, 2019
10
October, 2019
6
June, 2019
5
February, 2020
4
March, 2020
2
February, 2021
Available data
107
tsv
51
bam
39
bed narrowPeak
11
bigWig
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
tagAlign
Organism
196
Homo sapiens
Biosample type
185
tissue
9
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
310
GRCh38
hg19
Lab
196
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
196 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
total RNA-seq
DNase-seq
pCHi-C
tissue
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
+ See 15 more…
primary cell
endothelial cell of umbilical vein
5
cardiac fibroblast
2
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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