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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
5
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
6
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
6
November, 2017
5
July, 2019
3
June, 2019
1
March, 2020
Available data
31
bam
28
bigWig
20
bed narrowPeak
20
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
7
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
36
Homo sapiens
Biosample type
133
tissue
66
cell line
36
primary cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
36
AMP
Genome assembly (visualization)
30
hg19
21
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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