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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
22
ChIP-seq
8
ATAC-seq
5
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
22
DNA binding
14
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
6
transcription factor
2
RNA binding protein
2
control
Date released
64
February, 2021
16
October, 2019
6
November, 2017
5
July, 2019
3
June, 2019
1
March, 2020
Available data
90
bam
84
bigWig
54
tsv
32
bed narrowPeak
20
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
7
bed bed3+
6
fastq
4
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
95
Homo sapiens
Biosample type
tissue
64
cell line
31
primary cell
Organ
357
liver
299
epithelium
245
pancreas
107
connective tissue
95
vasculature
89
blood vessel
75
heart
66
artery
55
blood
55
bodily fluid
37
kidney
29
embryo
21
brain
17
vein
12
musculature of body
4
eye
2
adipose tissue
1
pericardium
Project
95
AMP
Genome assembly (visualization)
95
hg19
86
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of umbilical vein
12
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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