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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
7
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
20
October, 2019
6
November, 2017
4
June, 2019
3
July, 2019
Available data
32
bam
27
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
6
bed bed3+
6
fastq
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
33
Homo sapiens
Biosample type
132
tissue
66
cell line
33
primary cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
33
AMP
Genome assembly (visualization)
27
hg19
22
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
3
1
1
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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