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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
23
DNA binding
7
DNA accessibility
2
Transcription
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
20
October, 2019
6
November, 2017
4
June, 2019
2
July, 2019
Available data
32
bam
27
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
6
bed bed3+
6
fastq
2
tsv
1
tar
Organism
32
Homo sapiens
Biosample type
130
tissue
66
cell line
32
primary cell
Organ
346
epithelium
296
pancreas
37
connective tissue
33
kidney
32
vasculature
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
32
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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