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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
6
DNase-seq
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
21
DNA binding
7
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
RNA binding protein
2
transcription factor
Date released
20
October, 2019
4
June, 2019
4
November, 2017
3
July, 2019
Available data
30
bam
25
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
4
fastq
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
31
Homo sapiens
Biosample type
129
tissue
66
cell line
31
primary cell
Organ
394
epithelium
343
pancreas
37
connective tissue
34
kidney
31
vasculature
26
blood vessel
20
vein
15
brain
14
musculature of body
13
liver
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
31
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
2
1
1
brain microvascular endothelial cell
2
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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