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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
2
total RNA-seq
1
FAIRE-seq
Assay category
23
DNA binding
7
DNA accessibility
2
Transcription
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
20
October, 2019
6
November, 2017
4
June, 2019
2
July, 2019
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
32
Homo sapiens
Biosample type
87
tissue
66
cell line
32
primary cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
32
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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