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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
6
DNase-seq
Assay category
8
DNA binding
6
DNA accessibility
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Date released
6
November, 2017
4
June, 2019
4
October, 2019
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
14
Homo sapiens
Biosample type
14
primary cell
5
tissue
Organ
258
pancreas
256
epithelium
14
brain
14
vasculature
10
kidney
9
blood vessel
9
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
14
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
DNase-seq
primary cell
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of umbilical vein
2
2
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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