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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
6
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
21
DNA binding
7
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
RNA binding protein
2
transcription factor
Date released
21
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
1
March, 2020
Available data
30
bam
27
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
4
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
130
tissue
66
cell line
35
primary cell
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
35
AMP
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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