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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
36
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
4
total RNA-seq
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
41
DNA accessibility
10
Transcription
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
98
bed narrowPeak
80
bam
64
bigWig
62
bigBed narrowPeak
11
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
126
Homo sapiens
Biosample type
126
tissue
66
cell line
32
primary cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
254
brain
253
heart
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
126
AMP
Genome assembly (visualization)
99
GRCh38
65
hg19
Lab
126
AMP-T2D consortium
month_released!
July, 2019
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
tissue
coronary artery
5
35
2
1
tibial artery
23
1
2
1
aorta
13
4
1
1
1
ascending aorta
16
1
1
thoracic aorta
16
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