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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
23
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
March, 2020
Available data
79
bam
62
bigWig
57
bed narrowPeak
57
bigBed narrowPeak
14
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
90
Homo sapiens
Biosample type
90
tissue
58
cell line
30
primary cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
90
AMP-T2D consortium
organ_slims!
lymph node
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
thoracic aorta
16
2
coronary artery
5
1
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