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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
pCHi-C
Assay category
16
DNA binding
13
Transcription
2
DNA methylation
3D chromatin structure
Target of assay
16
control
Date released
11
May, 2019
6
August, 2021
5
July, 2019
5
October, 2019
3
February, 2020
2
March, 2020
Available data
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
54
cell line
32
tissue
12
primary cell
Organ
534
connective tissue
475
adipose tissue
378
pancreas
247
liver
150
bone element
145
kidney
137
heart
73
brain
32
blood vessel
32
vasculature
26
eye
26
limb
25
musculature of body
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
32
AMP-T2D consortium
files.file_type!
bed narrowPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
aorta
2
1
4
2
1
thoracic aorta
4
2
tibial artery
5
1
ascending aorta
3
2
coronary artery
2
1
pulmonary artery
2
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