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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
3
3D chromatin structure
3
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
62
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
75
Homo sapiens
Biosample type
57
tissue
10
cell line
8
primary cell
Organ
323
pancreas
223
epithelium
168
liver
159
kidney
114
connective tissue
101
bone element
76
heart
75
vasculature
74
blood vessel
66
adipose tissue
64
brain
55
eye
54
artery
31
limb
27
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
1
1
1
ascending aorta
3
1
thoracic aorta
4
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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