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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
10
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
2
hic
1
tar
Organism
80
Homo sapiens
Biosample type
63
tissue
10
cell line
7
primary cell
Organ
319
pancreas
218
epithelium
216
kidney
169
heart
169
liver
114
connective tissue
101
bone element
80
vasculature
79
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
80
AMP-T2D consortium
Audit category:
audit script error
files.file_type!
bigWig
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
1
choroid plexus epithelial cell
1
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