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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
26
ChIP-seq
22
total RNA-seq
6
single cell RNA-seq
5
pCHi-C
3
Hi-C
2
RRBS
1
WGBS
Assay category
71
DNA accessibility
28
Transcription
26
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
Date released
66
February, 2023
32
October, 2019
11
May, 2019
10
February, 2021
6
August, 2021
4
February, 2020
3
July, 2019
3
March, 2020
1
June, 2019
Available data
192
bam
166
bed narrowPeak
bigWig
89
bigBed narrowPeak
73
tsv
21
bed broadPeak
21
bigBed broadPeak
17
bed bed3+
6
fastq
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
136
Homo sapiens
Biosample type
116
tissue
10
cell line
10
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
43
GRCh38
40
hg19
Lab
136
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
2
aorta
2
4
1
1
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
retinal pigment epithelial cell
1
1
choroid plexus epithelial cell
1
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