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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
22
total RNA-seq
6
single cell RNA-seq
5
pCHi-C
3
Hi-C
2
RRBS
1
WGBS
Assay category
DNA accessibility
28
Transcription
26
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
Date released
31
October, 2019
11
May, 2019
6
August, 2021
4
February, 2020
4
February, 2023
3
July, 2019
3
March, 2020
2
February, 2021
1
June, 2019
Available data
165
bam
bigWig
77
bed narrowPeak
73
bigBed narrowPeak
73
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
Organism
65
Homo sapiens
Biosample type
53
tissue
10
primary cell
2
cell line
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
5
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
islet of Langerhans
2
14
4
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 4 more…
primary cell
endothelial cell of umbilical vein
5
2
retinal pigment epithelial cell
1
1
choroid plexus epithelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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