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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
13
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
95
DNA binding
14
DNA accessibility
2
3D chromatin structure
Target of assay
90
histone
90
histone modification
57
broad histone mark
33
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
59
October, 2019
39
May, 2019
7
June, 2019
4
November, 2017
2
July, 2019
Available data
227
bam
186
bigWig
160
bed narrowPeak
109
bigBed narrowPeak
73
tsv
19
bed broadPeak
19
bigBed broadPeak
15
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
111
Homo sapiens
Biosample type
88
tissue
23
primary cell
Organ
366
liver
130
brain
113
pancreas
104
kidney
94
heart
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
48
musculature of body
47
connective tissue
26
nerve
25
artery
18
ureter
14
adipose tissue
13
spleen
13
vein
6
eye
3
embryo
Project
111
AMP
Genome assembly (visualization)
110
hg19
108
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
tibial nerve
24
2
tibial artery
18
2
ascending aorta
13
1
thoracic aorta
12
aorta
11
+ See 1 more…
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
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