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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
11
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
71
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
66
histone
66
histone modification
41
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
39
May, 2019
33
October, 2019
7
June, 2019
4
November, 2017
2
July, 2019
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
85
Homo sapiens
Biosample type
62
tissue
23
primary cell
Organ
366
liver
130
brain
113
pancreas
104
kidney
94
heart
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
48
musculature of body
47
connective tissue
26
nerve
25
artery
18
ureter
14
adipose tissue
13
spleen
13
vein
eye
3
embryo
Project
85
AMP
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
eye
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
tibial artery
18
2
ascending aorta
13
1
thoracic aorta
12
aorta
11
coronary artery
3
2
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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