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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
6
ChIP-seq
Assay category
9
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
7
June, 2019
4
November, 2017
4
October, 2019
Available data
159
bam
134
bigWig
112
bed narrowPeak
67
tsv
63
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
15
Homo sapiens
Biosample type
12
primary cell
3
tissue
Organ
78
kidney
63
liver
47
brain
46
musculature of body
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
15
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
15 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
ascending aorta
1
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