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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
6
ChIP-seq
2
Hi-C
Assay category
11
DNA accessibility
6
DNA binding
2
3D chromatin structure
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
7
June, 2019
6
October, 2019
4
November, 2017
2
March, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
19
Homo sapiens
Biosample type
13
primary cell
6
tissue
Organ
78
kidney
65
liver
38
brain
36
limb
35
musculature of body
33
heart
27
epithelium
19
vasculature
18
ureter
15
blood vessel
14
pancreas
10
connective tissue
5
vein
4
artery
4
eye
3
adipose tissue
2
nerve
1
spleen
Project
19
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
tibial artery
2
aorta
1
ascending aorta
1
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