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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
16
DNase-seq
4
Hi-C
Assay category
64
DNA binding
16
DNA accessibility
4
3D chromatin structure
Target of assay
46
transcription factor
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
9
June, 2019
6
October, 2019
3
March, 2020
3
November, 2018
1
August, 2021
Available data
866
bam
776
bigWig
574
bed narrowPeak
471
fastq
441
bigBed narrowPeak
242
tsv
92
tagAlign
80
bed broadPeak
80
bigBed broadPeak
25
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
84
Homo sapiens
Biosample type
59
cell line
15
primary cell
10
tissue
Organ
78
kidney
65
liver
38
brain
36
limb
35
musculature of body
33
heart
27
epithelium
19
vasculature
18
ureter
15
blood vessel
14
pancreas
10
connective tissue
5
vein
4
artery
4
eye
3
adipose tissue
2
nerve
1
spleen
Project
84
AMP
Genome assembly (visualization)
83
hg19
64
GRCh38
Lab
83
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
58
1
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
hepatic stellate cell
1
hepatocyte
1
+ See 2 more…
tissue
liver
2
1
coronary artery
2
tibial artery
2
aorta
1
ascending aorta
1
+ See 1 more…
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