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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
ChIP-seq
6
single cell RNA-seq
2
Hi-C
1
pCHi-C
Assay category
67
Transcription
6
DNA binding
2
3D chromatin structure
Target of assay
4
transcription factor
2
control
Date released
58
February, 2021
6
August, 2021
5
July, 2019
4
March, 2020
3
February, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
76
Homo sapiens
Biosample type
58
cell line
15
tissue
3
primary cell
Organ
501
connective tissue
443
pancreas
410
adipose tissue
262
liver
177
heart
168
epithelium
144
brain
76
blood vessel
76
vasculature
64
artery
58
bone element
26
musculature of body
24
kidney
14
embryo
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
76
AMP
Genome assembly (visualization)
64
hg19
62
GRCh38
Lab
76
AMP-T2D consortium
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
tissue
aorta
1
4
1
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
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primary cell
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
smooth muscle cell of the coronary artery
1
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