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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
single cell RNA-seq
2
Hi-C
pCHi-C
Assay category
67
Transcription
2
3D chromatin structure
Date released
52
February, 2021
6
August, 2021
5
July, 2019
3
February, 2020
3
March, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
67
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
69
Homo sapiens
Biosample type
52
cell line
14
tissue
3
primary cell
Organ
476
connective tissue
423
pancreas
400
adipose tissue
174
liver
168
heart
161
epithelium
69
blood vessel
69
vasculature
58
artery
58
bone element
24
brain
22
kidney
14
embryo
10
musculature of body
7
limb
5
eye
5
nerve
1
pericardium
1
spinal cord
1
vein
Project
69
AMP
Genome assembly (visualization)
60
hg19
58
GRCh38
Lab
69
AMP-T2D consortium
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
single cell RNA-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
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primary cell
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
smooth muscle cell of the coronary artery
1
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