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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
1
pCHi-C
Assay category
6
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
1
August, 2018
1
November, 2019
Available data
914
bam
854
bigWig
624
tsv
301
fastq
277
bed narrowPeak
149
bigBed narrowPeak
80
zippedFastqFolder
33
bed bed3+
31
bed broadPeak
30
bigBed broadPeak
21
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
7
bedpe bed3+
7
hic
3
cool
2
hdf5
1
tar
Organism
7
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
4
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
7 results
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Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
in vitro differentiated cells
white fat cell
1
tissue
aorta
1
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