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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
DNase-seq
6
ChIP-seq
Assay category
15
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
11
June, 2019
6
October, 2019
4
November, 2017
Available data
192
bam
166
bed narrowPeak
161
bigWig
89
bigBed narrowPeak
73
tsv
21
bed broadPeak
21
bigBed broadPeak
17
bed bed3+
6
fastq
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
21
Homo sapiens
Biosample type
13
primary cell
8
tissue
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
21
AMP
Genome assembly (visualization)
20
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
21 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
kidney capillary endothelial cell
1
retinal pigment epithelial cell
1
+ See 1 more…
tissue
retina
3
coronary artery
2
tibial artery
2
ascending aorta
1
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