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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
16
DNase-seq
Assay category
64
DNA binding
16
DNA accessibility
Target of assay
46
transcription factor
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
9
June, 2019
6
October, 2019
3
November, 2018
Available data
866
bam
776
bigWig
574
bed narrowPeak
471
fastq
441
bigBed narrowPeak
242
tsv
92
tagAlign
80
bed broadPeak
80
bigBed broadPeak
25
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
80
Homo sapiens
Biosample type
58
cell line
14
primary cell
8
tissue
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
80
AMP
Genome assembly (visualization)
79
hg19
64
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
hepatic stellate cell
1
hepatocyte
1
+ See 2 more…
tissue
coronary artery
2
liver
2
tibial artery
2
ascending aorta
1
right lobe of liver
1
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