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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
11
DNase-seq
3
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
15
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Date released
7
June, 2019
6
October, 2019
5
July, 2019
Available data
83
bam
76
bigWig
tsv
58
bed narrowPeak
13
bed bed3+
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
18
Homo sapiens
Biosample type
9
primary cell
9
tissue
Organ
80
kidney
54
pancreas
53
epithelium
40
heart
39
limb
38
brain
35
musculature of body
28
liver
21
connective tissue
18
ureter
18
vasculature
16
blood vessel
8
adipose tissue
6
artery
4
eye
4
spleen
3
nerve
3
vein
1
blood
1
bodily fluid
1
embryo
Project
18
AMP
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
18 results
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DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
primary cell
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
tissue
coronary artery
2
1
tibial artery
2
1
aorta
1
ascending aorta
1
thoracic aorta
1
See all biosamples
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