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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
22
ChIP-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
22
DNA binding
7
DNA accessibility
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
6
transcription factor
2
RNA binding protein
2
control
Date released
56
February, 2021
15
October, 2019
6
November, 2017
4
July, 2019
4
June, 2019
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
85
Homo sapiens
Biosample type
tissue
56
cell line
29
primary cell
Organ
357
liver
301
epithelium
250
pancreas
89
connective tissue
85
vasculature
80
blood vessel
67
heart
58
artery
55
blood
55
bodily fluid
40
kidney
29
embryo
20
brain
15
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
85
AMP
Genome assembly (visualization)
84
hg19
78
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
4
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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