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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
single cell RNA-seq
2
pCHi-C
Assay category
67
Transcription
Date released
52
February, 2021
6
August, 2021
5
July, 2019
3
February, 2020
3
March, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
69
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
69
Homo sapiens
Biosample type
52
cell line
15
tissue
2
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
69
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
bladder (urinary bladder)
1
+ See 2 more…
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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