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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
56
total RNA-seq
44
ATAC-seq
6
single cell RNA-seq
4
DNase-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
102
DNA binding
62
Transcription
49
DNA accessibility
3
3D chromatin structure
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
22
control
9
transcription factor
5
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
June, 2019
6
August, 2021
6
November, 2017
4
March, 2020
3
February, 2020
Available data
169
bam
138
bigWig
124
bed narrowPeak
76
bigBed narrowPeak
63
tsv
10
bed broadPeak
10
bigBed broadPeak
6
fastq
6
tagAlign
4
bed bed3+
3
hic
2
bedpe bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
123
tissue
66
cell line
28
primary cell
Organ
936
pancreas
779
liver
648
connective tissue
491
epithelium
478
adipose tissue
293
heart
262
kidney
238
brain
217
vasculature
214
blood vessel
159
bone element
136
artery
85
limb
69
blood
69
bodily fluid
53
eye
43
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
217
AMP
Genome assembly (visualization)
176
GRCh38
149
hg19
Lab
217
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
June, 2019
July, 2019
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
thoracic aorta
16
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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