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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
9
DNase-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
91
DNA binding
12
DNA accessibility
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
47
October, 2019
45
May, 2019
6
July, 2019
6
November, 2017
5
June, 2019
3
March, 2020
Available data
105
bam
87
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
1
tsv
Organism
112
Homo sapiens
Biosample type
77
tissue
35
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
89
hg19
80
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
assay_slims!
Transcription
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
tibial artery
23
2
1
aorta
13
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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