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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
37
ATAC-seq
6
single cell RNA-seq
6
total RNA-seq
3
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
50
DNA binding
40
DNA accessibility
12
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
22
broad histone mark
14
narrow histone mark
11
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
7
July, 2019
6
August, 2021
3
June, 2019
3
March, 2020
2
February, 2020
Available data
79
bed narrowPeak
61
bam
49
bigWig
42
bigBed narrowPeak
13
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
106
Homo sapiens
Biosample type
106
tissue
66
cell line
37
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
84
GRCh38
49
hg19
Lab
106
AMP-T2D consortium
organ_slims!
limb
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
aorta
13
4
1
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
pulmonary artery
2
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