Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
6
single cell RNA-seq
4
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
27
DNA binding
9
Transcription
4
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
22
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
2
November, 2017
Available data
29
bam
10
tsv
6
bigWig
3
hic
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
fastq
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
hdf5
1
tar
Organism
44
Homo sapiens
Biosample type
28
tissue
14
primary cell
2
cell line
Organ
311
pancreas
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
GRCh38
164
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
liver
assembly!
GRCh38
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download